Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD51

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sex
female
cell line
MCF-7
lab
Michael Snyder, Stanford
sample_type
immortalized cell line
health state
breast cancer (adenocarcinoma)
age
69 year
donor ID
ENCDO000AAE
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
37099093
Reads aligned (%)
74.7
Duplicates removed (%)
18.5
Number of peaks
3742 (qval < 1E-05)

hg19

Number of total reads
37099093
Reads aligned (%)
73.9
Duplicates removed (%)
18.9
Number of peaks
3049 (qval < 1E-05)

Base call quality data from DBCLS SRA